Replication Data for: Automated Cone Photoreceptors Detection in Adaptive Optics Flood-Illumination Ophthalmoscopy

The dataset is made available and consists of two partitions, a training and a testing dataset. The training dataset contains 625 annotated patches (from 20 images from 18 subjects) and the testing dataset contains 54 annotated patches (from 18 images from 18 subjects). The testing dataset contains annotations from four different graders. Further information about the annotations can be found in paper.

Training: The training image patches are individual .tiff files with the dimension of (128x128 pixels). Use any tiff-reader you want.
Test: The test image patches and annotations are .tiff files with the dimensions of (3x128x128). NOTE: Need to be loaded using imageio.mimread()

Link to code: https://gitlab.com/radiology/eye/ao-vision/ao-fio-conedetect

Python to load the image files. import imageio import tifffile


Training-dataset images  

image_training_path = "path/to/data/image.tiff"  

image_array = tifffile.imread(image_training_path)  
 

Test-dataset images

image_test_path = "path/to/data/image.tiff" image_array = imageio.mimread(image_test_path) # Not using mimread will lead to wrong loading of the tiff-file

Data and Resources

This dataset has no data

Additional Info

Field	Value
Title	Replication Data for: Automated Cone Photoreceptors Detection in Adaptive Optics Flood-Illumination Ophthalmoscopy
Description	The dataset is made available and consists of two partitions, a training and a testing dataset. The training dataset contains 625 annotated patches (from 20 images from 18 subjects) and the testing dataset contains 54 annotated patches (from 18 images from 18 subjects). The testing dataset contains annotations from four different graders. Further information about the annotations can be found in paper. Training: The training image patches are individual .tiff files with the dimension of (128x128 pixels). Use any tiff-reader you want. Test: The test image patches and annotations are .tiff files with the dimensions of (3x128x128). NOTE: Need to be loaded using imageio.mimread() Link to code: https://gitlab.com/radiology/eye/ao-vision/ao-fio-conedetect Python to load the image files. `import imageio import tifffile` `Training-dataset images image_training_path = "path/to/data/image.tiff" image_array = tifffile.imread(image_training_path) Test-dataset images` `image_test_path = "path/to/data/image.tiff" image_array = imageio.mimread(image_test_path) # Not using mimread will lead to wrong loading of the tiff-file`
Keywords	Cone...
Contact points	Contact point 1 URI Name Contact dataset owners via DataverseNL. Name (translations) Email rso@erasmusmc.nl Identifier URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ
Publisher	Publisher 1 URI Name Erasmus MC Name (translations) Email rso@erasmusmc.nl URL https://www.erasmusmc.nl/en/contact-details-and-directions Type Publisher note Publisher type Identifier NL-EMC
Creator	Creator 1 URI Name Durand, Marine Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 17 Creator 2 URI Name Wooning, Sander Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 18 Creator 3 URI Name Sampson, Danuta M. Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 19 Creator 4 URI Name Leroy, Bart Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 2 Creator 5 URI Name Hennekam, Sem Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 3 Creator 6 URI Name Chen, Fred K. Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 4 Creator 7 URI Name van Walsum, Theo Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 5 Creator 8 URI Name van Haute, Manon Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 6 Creator 9 URI Name Liman, Kübra Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 7 Creator 10 URI Name Sánchez Brea, Luisa Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 8 Creator 11 URI Name van den Born, L. Ingeborgh Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 1 Creator 12 URI Name Pelt, Daniël M. Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 9 Creator 13 URI Name Chateau, Nicolas Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 10 Creator 14 URI Name Andrade De Jesus, Danilo Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 11 Creator 15 URI Name Roshandel, Danial Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 12 Creator 16 URI Name Heutinck, Pam A.T. Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 13 Creator 17 URI Name van den Broeck, Filip Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 14 Creator 18 URI Name Verhoeven, Virginie J.M. Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 15 Creator 19 URI Name Thiadens, Alberta A.H.J. Name (translations) Email rso@erasmusmc.nl URL https://dataverse.nl/dataset.xhtml?persistentId=doi:10.34894/2GXEDZ Type Publisher note Publisher type Identifier 16
Landing page	https://doi.org/10.34894/2GXEDZ
Release date	2024-05-23T22:00:00+00:00
Modification date
Temporal start date
Temporal end date
In Series
Version
Version notes
Identifier	doi:10.34894/2GXEDZ
Frequency
Provenance
Type
Temporal coverage
Temporal resolution
Spatial coverage
Spatial resolution in meters
Access rights	http://publications.europa.eu/resource/authority/access-right/RESTRICTED
Other identifier
Theme	https://publications.europa.eu/resource/authority/data-theme/HEAL
Language	http://id.loc.gov/vocabulary/iso639-1/en
Documentation
Conforms to
Is referenced by
Distribution
Sample
Analytics
Applicable legislation	http://creativecommons.org/licenses/by-nc-sa/4.0
Has version	1.0
Code values
Coding system
Purpose
Health category
Health theme
Legal basis
Minimum typical age
Maximum typical age
Number of records
Number of records for unique individuals.
Personal data
Publisher note
Publisher type
Trusted Data Holder
Population coverage
Retention period
Health data access body
Qualified relation
Provenance activity
Qualified attribution
Quality annotations
URI	https://fdp.erasmusmc.nl/dataset/fee8a178-21db-44c5-9e8d-4e814174b0a5