EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC

The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276

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Titel EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
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The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
Keywords
Contact points
Contact point 1
URI
Naam
Servicedesk Health-RI
Name (translations)
Email
servicedesk@health-ri.nl
Identifier
https://ror.org/05wg1m734
URL
    Publisher
    Publisher 1
    URI
    Naam
    Health-RI
    Name (translations)
    Email
    servicedesk@health-ri.nl
    URL
    https://www.health-ri.nl/
    Type
    Publisher note
    Publisher type
    Identifier
    https://ror.org/05wg1m734
    Creator
    Creator 1
    URI
    Naam
    BSC
    Name (translations)
    Email
    info@bsc.es
    URL
    https://www.bsc.es/
    Type
    Publisher note
    Publisher type
    Identifier
    https://ror.org/05wg1m734
    Landing page
    Release date 2025-01-29T11:11:11+00:00
    Modification date 2025-01-29T13:36:10+00:00
    In Series
      Versie
      Version notes
      Identifier EGAD50000000276
      Frequency
      Provenance
      Type
      Temporal coverage
      Temporal resolution
      Spatial coverage
      Spatial resolution in meters
      Access rights http://publications.europa.eu/resource/authority/access-right/PUBLIC
      Other identifier
      Theme
      1. http://publications.europa.eu/resource/authority/data-theme/HEAL
      Taal
      1. http://id.loc.gov/vocabulary/iso639-1/en
      Documentation
      Conforms to
      Is referenced by
      Distribution
      1. https://fdp-acc.healthdata.nl/distribution/6bca9f14-1eb4-441b-a3df-0f7e83c91ef1
      Sample
      Analytics
      Applicable legislation
      Has version
      Code values
      Coding system
      Purpose
      Health category
      Health theme
      Legal basis
      Minimum typical age 1
      Maximum typical age 100
      Number of records 10
      Number of records for unique individuals. 4
      Personal data
      Publisher note
      Publisher type
      Trusted Data Holder
      Population coverage

      This test dataset covers no real population.
      Retention period
      Health data access body
      Qualified relation
      Provenance activity
      Qualified attribution
      Quality annotations
      URI https://fdp-acc.healthdata.nl/dataset/9b8a0ff1-7405-4b41-99b3-9cffbb971e16