EGAS00001002560 LLDeep DAG2+ scRNA-seq in PBMCs

Single cell transcriptomics of PBMCs of 47 donors from the Lifelines Deep cohort (general population, Northern part of the Netherlands). Cells of five or six different donors were pooled together in one sample pool, resulting in eight different sample pools. In total, 28.855 cells were captured and their transcriptomes were sequenced to an average depth of 74k. Genotype data was available for each donor, which allowed us to use the Demuxlet method that uses variable SNPs between the pooled individuals to determine which cell belongs to which individual. Since genotype information is lacking of 2 individuals, the transcriptome of only 45 individuals could be retrieved.

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Title EGAS00001002560 LLDeep DAG2+ scRNA-seq in PBMCs
Description

Single cell transcriptomics of PBMCs of 47 donors from the Lifelines Deep cohort (general population, Northern part of the Netherlands). Cells of five or six different donors were pooled together in one sample pool, resulting in eight different sample pools. In total, 28.855 cells were captured and their transcriptomes were sequenced to an average depth of 74k. Genotype data was available for each donor, which allowed us to use the Demuxlet method that uses variable SNPs between the pooled individuals to determine which cell belongs to which individual. Since genotype information is lacking of 2 individuals, the transcriptome of only 45 individuals could be retrieved.
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Contact point 1
URI
http://umcgresearchdatacatalogue.nl/catalogue_rdf/api/rdf/Contacts/firstName=Monique%20van%20der&lastName=Wijst&resource=EGAS00001002560
Name
Monique van der Wijst
Name (translations)
Email
m.g.p.van.der.wijst@umcg.nl
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URL
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Publisher 1
URI
http://umcgresearchdatacatalogue.nl/catalogue_rdf/api/rdf/Agents/id=UMCG&resource=EGAS00001002560
Name
University Medical Center Groningen
Name (translations)
Email
researchdatacatalogue@umcg.nl
URL
https://www.umcg.nl/
Type
Identifier
https://ror.org/03cv38k47
Creator
Creator 1
URI
http://umcgresearchdatacatalogue.nl/catalogue_rdf/api/rdf/Agents/id=UMCG&resource=EGAS00001002560
Name
University Medical Center Groningen
Name (translations)
Email
researchdatacatalogue@umcg.nl
URL
https://www.umcg.nl/
Type
Identifier
https://ror.org/03cv38k47
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    Identifier https://ega-archive.org/datasets/EGAD00010001315
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    Spatial resolution in meters
    Access rights http://publications.europa.eu/resource/authority/access-right/NON_PUBLIC
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    1. http://publications.europa.eu/resource/authority/data-theme/HEAL
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    1. http://data.europa.eu/eli/reg/2022/868/oj
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    URI http://umcgresearchdatacatalogue.nl/catalogue_rdf/api/rdf/CollectionEvents/name=EGAS00001002560%20LLDeep%20DAG2%2B%20scRNA-seq%20in%20PBMCs&resource=EGAS00001002560