EGAS00001000644 GoNL release 5 raw SNV calls

These files contain a total of 20.4M SNVs and the complete information output by the GATK UnifiedGenotyper v1.4 on all 767 GoNL samples. These calls are not trio-aware and all genotypes were reported regardless of their quality. Both filtered and passing calls are reported in these files. Filtered calls include (1) calls failing our VQSR threshold and (2) calls in the GoNL inaccessible genome.

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This dataset has no data

Additional Info

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Title EGAS00001000644 GoNL release 5 raw SNV calls
Description

These files contain a total of 20.4M SNVs and the complete information output by the GATK UnifiedGenotyper v1.4 on all 767 GoNL samples. These calls are not trio-aware and all genotypes were reported regardless of their quality. Both filtered and passing calls are reported in these files. Filtered calls include (1) calls failing our VQSR threshold and (2) calls in the GoNL inaccessible genome.
Keywords
Contact points
Contact point 1
URI
http://umcgresearchdatacatalogue.nl/catalogue_rdf/api/rdf/Contacts/firstName=Gert-Jan&lastName=van%20de%20Geijn&resource=EGAS00001000644
Name
Gert-Jan van de Geijn
Name (translations)
Email
gonl@bbmri.nl
Identifier
URL
Publisher
Publisher 1
URI
http://umcgresearchdatacatalogue.nl/catalogue_rdf/api/rdf/Agents/id=UMCG&resource=EGAS00001000644
Name
University Medical Center Groningen
Name (translations)
Email
researchdatacatalogue@umcg.nl
URL
https://www.umcg.nl/
Type
Identifier
https://ror.org/03cv38k47
Creator
Creator 1
URI
http://umcgresearchdatacatalogue.nl/catalogue_rdf/api/rdf/Agents/id=UMCG&resource=EGAS00001000644
Name
University Medical Center Groningen
Name (translations)
Email
researchdatacatalogue@umcg.nl
URL
https://www.umcg.nl/
Type
Identifier
https://ror.org/03cv38k47
Landing page
Release date
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Temporal end date
In Series
    Version
    Version notes
    Identifier https://ega-archive.org/datasets/EGAD00001000743
    Frequency
    Provenance
    Type
    Temporal coverage
    Temporal resolution
    Spatial coverage
    Spatial resolution in meters
    Access rights http://publications.europa.eu/resource/authority/access-right/NON_PUBLIC
    Other identifier
    Theme
    1. http://publications.europa.eu/resource/authority/data-theme/HEAL
    Language
    Documentation
    Conforms to
    Is referenced by
    Analytics
    Applicable legislation
    1. http://data.europa.eu/eli/reg/2022/868/oj
    Has version
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    Purpose
    Health category
    Health theme
    Legal basis
    Minimum typical age
    Maximum typical age
    Number of records
    Number of records for unique individuals.
    Personal data
    Publisher note
    Publisher type
    Trusted Data Holder
    Population coverage
    Retention period
    Health data access body
    Qualified relation
    Provenance activity
    Qualified attribution
    Quality annotations
    URI http://umcgresearchdatacatalogue.nl/catalogue_rdf/api/rdf/CollectionEvents/name=EGAS00001000644%20GoNL%20release%205%20raw%20SNV%20calls&resource=EGAS00001000644